PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0723
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family YABBY
Protein Properties Length: 216aa    MW: 24040.4 Da    PI: 7.5318
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0723genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY229.58.2e-71111772169
        YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfk.vvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesastsv 96 
                  d+ s ++q+Cyv+CnfC+t+lavsvP +slf+ +v vrCGhCt+llsv+++     +a + hl +s+  +  llee ++     ++ ++++ +++ +v
  Gh_A11G0723  11 DHLSPADQLCYVHCNFCDTVLAVSVPCSSLFNnTVMVRCGHCTNLLSVDMRGLLLPTANQLHLAHSFFTPqnLLEEIRSCAP-PNMVMINHPNPNDTV 107
                  688999************************9549****************99999999999999998766335555554332.233333333333322 PP

        YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                          e ee++++p v+rPPekrqrvPsaynrfikeeiqrika+nPdishr+afsaaaknWahfP+ihfg
  Gh_A11G0723 108 IR---GAAELEEIAKPPVVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHRDAFSAAAKNWAHFPRIHFG 177
                  22...57899*****999******************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.3E-6715177IPR006780YABBY protein
SuperFamilySSF470956.68E-8122172IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.2E-4126172IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSSSSVSFSS DHLSPADQLC YVHCNFCDTV LAVSVPCSSL FNNTVMVRCG HCTNLLSVDM  60
RGLLLPTANQ LHLAHSFFTP QNLLEEIRSC APPNMVMINH PNPNDTVIRG AAELEEIAKP  120
PVVNRPPEKR QRVPSAYNRF IKEEIQRIKA GNPDISHRDA FSAAAKNWAH FPRIHFGQMP  180
DQAVMKMKNN VRQQEGEEAV VKDGFFVPTN VGVSPY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489748.11e-161PREDICTED: axial regulator YABBY 1-like
SwissprotO221525e-85YAB1_ARATH; Axial regulator YABBY 1
TrEMBLA0A0B0P5Z71e-162A0A0B0P5Z7_G
STRINGVIT_15s0048g00550.t011e-114(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22172877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.19e-83YABBY family protein